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Watanabe, T., Nagai, S., Kawakami, Y., Asakura, T., Kikuchi, J., Inaba, N., Taniuchi, Y., Kurogi, H., Chow, S., Tomoda, T., Ambe, D. and Hasegawa, D. “18S rRNA gene sequences of leptocephalus gut contens, POM, and biological oceanographic conditions in the western North Pacific” Sci. Rep. (in press).

Wei, F., Sakata, K., Ito, K., Date, Y. and Kikuchi, J. “Fish ecotyping based on machine learning and inferred network analysis of chemical and physical properties” Sci. Rep. 11, 3766 (2021). doi: 10.1038/s41598-021-83194-0

Yamada, S., Chikayama, E. and Kikuchi, J. “Signal Deconvolution and Generative Topographic Mapping Regression for Solid-state NMR of Multi-component Materials” Int. J. Mol. Sci. 22, 1086 (2021). doi: 10.3390/ijms22031086

Date, Y., Wei, F., Tsuboi, T., Ito, K., Sakata, K. and Kikuchi, J. “Relaxometric learning: a pattern recognition method for T2 relaxation curves based on machine learning supported by an analytical framework” BMC Chemistry 15, 13 (2021). doi: 10.21203/rs.3.rs-31363/v3

Yamawaki, R., Tei, A., Ito, K. and Kikuchi, J. “Decomposition Factor Analysis Based on Virtual Experiments Throughout Bayesian Optimization for Compost-Degradable Polymers” Appl. Sci. 11, 2820 (2021). doi: 10.3390/app11062820

Kitami, T., Fukuda, S., Kato, T., Yamaguti, K., Nakatomi, T., Yamano, E., Kataoka, Y., Mizuno, K., Tsuboi, Y., Kogo, Y., Suzuki, H., Ito, M., Morioka, M., Kawaji, H., Koseki, H., Kikuchi, J., Hayashizaki, Y., Ohno, J., Kuratsune, H. and Watanabe, Y. “Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population” Sci. Rep. 10, 1-12 (2020). doi: 10.1038/s41598-020-77105-y

Ito, K., Tsuboi, Y. and Kikuchi, J. “Spatial molecular-dynamically ordered NMR spectroscopy of intact bodies and heterogeneous systems” Commun. Chem. 3, 1-8 (2020). doi: 10.1038/s42004-020-0330-1

Yamada, S., Kurotani, A., Chikayama, E. and Kikuchi, J. “Signal Deconvolution and Noise Factor Analysis Based on Combination of Time–Frequency Analysis and Probabilistic Sparse Matrix Factorization” Int. J. Mol. Sci. 21, 2978 (2020). doi: 10.3390/ijms21082978

Wei, F., Fukuchi, M., Ito, K., Sakata, K., Asakura, T., Date, Y. and Kikuchi, J. “Large-Scale Evaluation of Major Soluble Macromolecular Components of Fish Muscle from Conventional 1H NMR Spectral Database” Molecules 25, 1966 (2020). doi: 10.3390/molecules25081966

Kikuchi, J. & Yamada, S. “Gut microbe transformation of natural products –plant polysaccharides are metabolized by animal symbionts” Comprehensive Natural Products III 519-528 (2020). doi: 10.1016/B978-0-12-409547-2.14657-8

Sagi H, Shibuya S, Kato T, Nakanishi Y, Tsuboi A, Moriya S, Ohno H, Miyamoto H, Kodama H, Shimizu T. SOD1 deficiency alters gastrointestinal microbiota and metabolites in mice. (2020) Exp. Gerontol. 130:110795-110795. doi: 10.1016/j.exger.2019.110795

Kazuaki Yamaguchi, Shigehiro Kuraku. Unbiasing Genome-based Analyses of Selection: An Example using Iconic Shark Species. Front. Mar. Sci. 2021. accepted. doi: 10.3389/fmars.2021.573853

Koh Onimaru, Kaori Tatsumi, Chiharu Tanegashima, Mitsutaka Kadota, Osamu Nishimura, Shigehiro Kuraku. Developmental hourglass and heterochronic shifts in fin and limb development. eLife 2021. 10: e62865. doi: 10.7554/eLife.62865

Aburatani N, Takagi W, Wong MK, Kadota M, Kuraku S, Tokunaga K, Kofuji K, Saito K, Godo W, Sakamoto T, Hyodo S. Facilitated NaCl Uptake in the Highly Developed Bundle of the Nephron in Japanese Red Stingray Hemitrygon akajei Revealed by Comparative Anatomy and Molecular Mapping. Zoolog Sci. 2020. 37(5):458-466. doi: 10.2108/zs200038

Onimaru K, Nishimura O, Kuraku S. Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information. PLoS One 2020. 15(7): e0235748. doi: 10.1371/journal.pone.0235748

Rie Kusakabe, Shinnosuke Higuchi, Masako Tanaka, Mitsutaka Kadota, Osamu Nishimura, Shigeru Kuratani. Novel developmental bases for the evolution of hypobranchial muscles in vertebrates. BMC Biology 2020. 18: 120. doi: 10.1186/s12915-020-00851-y

Yoshinobu Uno, Ryo Nozu, Itsuki Kiyatake, Nobuyuki Higashiguchi, Shuji Sodeyama, Kiyomi Murakumo, Keiichi Sato, Shigehiro Kuraku. Cell culture-based shark karyotyping as a resource for chromosome-scale genome analysis. Communications Biology 2020. 3(1): 652. doi: 10.1038/s42003-020-01373-7

Kazuaki Yamaguchi, Mitsumasa Koyanagi, Shigehiro Kuraku. Visual and non-visual opsin genes of sharks and other non-osteichthyan vertebrates: genomic exploration of underwater photoreception. Journal of Evolutionary Biology 2020. 00:1-9. doi: 10.1111/jeb.13730

Mitsutaka Kadota, Kazuaki Yamaguchi Yuichiro Hara, Shigehiro Kuraku. Early vertebrate origin of CTCFL, a CTCF paralog, revealed by proximity-guided shark genome scaffolding. Scientific Reports 2020. 10(1):14629. doi: 10.1038/s41598-020-71602-w

Phillip A. Morin, Alana Alexander, Mark Blaxter, Susana Caballero, Olivier Fedrigo, Michael C. Fontaine, Andrew D. Foote, Shigehiro Kuraku, Brigid Maloney, Morgan L. McCarthy, Michael R. McGowen, Jacquelyn Mountcastle Mariana F. Nery, Morten Tange Olsen, Patricia E. Rosel, Erich D. Jarvis. Building genomic infrastructure: Sequencing platinum‐standard reference‐quality genomes of all cetacean species. Marine Mammal Science 2020 36: 1356-1366. doi: 10.1111/mms.12721

Kadota M, Nishimura O, Miura H, Tanaka K, Hiratani I, Kuraku S. Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding? GigaScience. 2020. 9(1): pii: giz158. doi: 10.1093/gigascience/giz158

Kajikawa E, Horo U, Ide T, Mizuno K, Minegishi K, Hara Y, Ikawa Y, Nishimura H, Uchikawa M, Kiyonari H, Kuraku S, Hamada H. Nodal paralogues underlie distinct mechanisms for visceral left-right asymmetry in reptiles and mammals. Nature Ecology and Evolution 2020. 4: 261-269. doi: 10.1038/s41559-019-1072-2

Panthee S., Kito N., Hayashi T., Shimizu T, Ishikawa J., Osada H., and Takahashi S. Activation of LuxR family regulator by β-carboline chemical signals induced reveromycin in Streptomyces sp. SN-593. (2020) Sci. Rep. 10(1):10230. doi: 10.1038/s41598-020-66974-y

Nogawa T., Terai A., Keita Amagai K., Hashimoto J., Yushi Futamura Y., Okano A., Fujie M., Satoh N., Ikeda H., Shin-ya K., Osada H., Takahashi S. Heterologous expression of the biosynthetic gene cluster for verticilactam and identification of new analogues. (2020) J. Nat. Prod. 83, 3598–3605. doi: 10.1021/acs.jnatprod.0c00755

Kinoshita N., Huang A.J.Y., McHugh T.J., Miyawaki A., Shimogori T. (2020) Diffusible GRAPHIC to visualize morphology of cells after specific cell-cell contact. Sci. Rep., 10 (1): 14437. doi: 10.1038/s41598-020-71474-0.

Sasaki, N., Miyamoto, K., Maslowski, K.M., Ohno, H., Kanai, T,, Sato, T. Development of a scalable co-culture system for gut anaerobes and human colon epithelium. (2020) Gastroenterology, 159, 388-390. doi: 10.1053/j.gastro.2020.03.021.

Jangid, A., Fukuda, S., Seki, M., Horiuchi, T., Suzuki, Y., Taylor, T.D., Ohno, H., Prakash, T. (2020) Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice. PLoS One, 15, e0228358. doi: 10.1371/journal.pone.0228358.

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Zhu, Y., Cui, G., Miyauchi, E., Nakanishi, Y., Mukohira, H., Shimba, A., Abe, S., Tani-Ichi, S., Hara, T., Nakase, H., Chiba, T., Sehara-Fujisawa, A., Seno, H., Ohno, H., Ikuta, K. Intestinal epithelial cell-derived IL-15 determines local maintenance and maturation of intraepithelial lymphocytes in the intestine. (2020) Int Immunol, 32, 307-319. doi: 10.1093/intimm/dxz082.

Lew, L.C., Hor, Y.Y., Jaafar, M.H., Lau, A.S., Khoo, B.Y., Sasidharan, S., Choi, S.B., Ong, K.L., Kato, T., Nakanishi, Y., Ohno, H., Liong, M.T. Effects of Potential Probiotic Strains on the Fecal Microbiota and Metabolites of D-Galactose-Induced Aging Rats Fed with High-Fat Diet. Probiotics Antimicrob Proteins. (2020) 12, 545-562. doi: 10.1007/s12602-019-09545-6.

Minamide, K., Sato, T., Nakanishi, Y., Ohno, H., Kato, T., Asano, J., Ohteki, T,. IRF2 maintains the stemness of colonic stem cells by limiting physiological stress from interferon. (2020) Sci Rep, 10, 14639. doi: 10.1038/s41598-020-71633-3.

Kitami, T., Fukuda, S., Kato, T., Yamaguti, K., Nakatomi, Y., Yamano, E., Kataoka, Y., Mizuno, K., Tsuboi, Y., Kogo, Y., Suzuki, H., Itoh, M., Morioka, M.S., Kawaji, H., Koseki, H., Kikuchi, J., Hayashizaki, Y., Ohno, H., Kuratsune, H., Watanabe, Y. Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population. Sci Rep. (2020) 10, 19933. doi:10.1038/s41598-020-77105-y.

Akama, Y., Park, E.J., Satoh-Takayama, N., Gaowa, A., Ito, A., Kawamoto, E., Darkwah, S., Appiah, M,G., Myint, P.K., Ohno, H., Imai, H., Shimaoka, M. Sepsis Induces Deregulation of IL-13 Production and PD-1 Expression in Lung Group 2 Innate Lymphoid Cells. Shock. (2020) 55, 357-370. doi: 10.1097/SHK.0000000000001647.

Kurashima, Y., Kigoshi, T., Murasaki, S., Arai, F., Shimada, K., Seki, N., Kim, Y.G., Hase, K., Ohno, H., Kawano, K., Ashida, H., Suzuki, T., Morimoto, M., Saito, Y., Sasou, A., Goda, Y., Yuki, Y., Inagaki, Y., Iijima, H., Suda, W., Hattori, M., Kiyono, H. Pancreatic glycoprotein 2 is a first line of defense for mucosal protection in intestinal inflammation. Nat Commun. (2021) 2, 1067. doi: 10.1038/s41467-021-21277-2.

Barutta, F., Kimura, S., Hase, K., Bellini, S., Corbetta, B., Corbelli, A., Fiordaliso, F., Barreca, A., Papotti. M.G., Ghiggeri, G.M., Salvidio, G., Roccatello, D., Audrito, V., Deaglio, S., Gambino, R., Bruno, S., Camussi, G., Martini, M., Hirsch, E., Durazzo. M,, Ohno, H., Gruden, G. Protective Role of the M-Sec-Tunneling Nanotube System in Podocytes. J Am Soc Nephrol. (2021) Mar 15:ASN.2020071076. doi: 10.1681/ASN.2020071076. Online ahead of print.

Iino T, Oshima K, Hattori M, Ohkuma M, Amachi S. Iodidimonas gelatinilytica sp. nov., aerobic iodide-oxidizing bacteria isolated from brine water and surface seawater. Antonie Van Leeuwenhoek. 2021 Mar 24. doi: 10.1007/s10482-021-01546-2.

Konishi T, Kusakabe S, Hino A, Inamoto K, Yoshifuji K, Kiridoshi Y, Takeshita K, Sasajima S, Toya T, Igarashi A, Najima Y, Kobayashi T, Doki N, Motooka D, Nakamura S, Suyama M, Suda W, Shiota A, Atarashi K, Hattori M, Honda K, Yokota T, Ohashi K, Shibayama H, Fukushima K, Kakihana K. Low diversity of gut microbiota in the early phase of post-bone marrow transplantation increases the risk of chronic graft-versus-host disease. (2021) Bone Marrow Transplant, Mar 8. doi: 10.1038/s41409-021-01249-2. Epub ahead of print. PMID: 33686248.

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Ohira H, Tsuruya A, Oikawa D, Nakagawa W, Mamoto R, Hattori M, Waki T, Takahashi S, Fujioka Y, Nakayama T. Alteration of oxidative-stress and related marker levels in mouse colonic tissues and fecal microbiota structures with chronic ethanol administration: Implications for the pathogenesis of ethanol-related colorectal cancer. PLoS One. 2021 Feb 12;16(2): e0246580. doi: 10.1371/journal.pone.0246580.

Tanigawa T, Watanabe T, Higashimori A, Shimada S, Kitamura H, Kuzumoto T, Nadatani Y, Otani K, Fukunaga S, Hosomi S, Tanaka F, Kamata N, Nagami Y, Taira K, Shiba M, Suda W, Hattori M, Fujiwara Y. Rebamipide ameliorates indomethacin-induced small intestinal damage and proton pump inhibitor-induced exacerbation of this damage by modulation of small intestinal microbiota. (2021) PLoS One, Jan 28;16(1):e0245995. doi: 10.1371/journal.pone.0245995. PMID: 33507971; PMCID: PMC7842908.

Ogata Y, Sakamoto M, Ohkuma M, Hattori M, Suda W. Complete Genome Sequence of Alistipes indistinctus Strain 2BBH45, Isolated from the Feces of a Healthy Japanese Male. (2021) Microbiol Resour Announc., Jan 14;10(2):e01284-20. doi: 10.1128/MRA.01284-20. PMID: 33446594; PMCID: PMC7849707.

Yasuda S, Okahashi N, Tsugawa H, Ogata Y, Ikeda K, Suda W, Arai H, Hattori M, Arita M. Elucidation of Gut Microbiota-Associated Lipids Using LC-MS/MS and 16S rRNA Sequence Analyses. (2020) iScience, Nov 23;23(12):101841. doi: 10.1016/j.isci.2020.101841. PMID: 33313490; PMCID: PMC7721639.

Yahara K, Suzuki M, Hirabayashi A, Suda W, Hattori M, Suzuki Y, Okazaki Y. Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria. (2021) Nat Commun., Jan 4;12(1):27. doi: 10.1038/s41467-020-20199-9. PMID: 33397904; PMCID: PMC7782811.

Ogata Y, Sakamoto M, Ohkuma M, Hattori M, Suda W. Complete Genome Sequence of Adlercreutzia sp. Strain 8CFCBH1, a Potent Producer of Equol, Isolated from Healthy Japanese Feces. (2020) Microbiol Resour Announc., Dec 3;9(49):e01240-20. doi: 10.1128/MRA.01240-20. PMID: 33273007; PMCID: PMC7714862.

Watanabe E, Kawashima Y, Suda W, Kakihara T, Takazawa S, Nakajima D, Nakamura R, Nishi A, Suzuki K, Ohara O, Fujishiro J. Discovery of Candidate Stool Biomarker Proteins for Biliary Atresia Using Proteome Analysis by Data-Independent Acquisition Mass Spectrometry. (2020) Proteomes, Nov 27;8(4):36. doi: 10.3390/proteomes8040036. PMID: 33260872; PMCID: PMC7709124.

Watanabe T, Nadatani Y, Suda W, Higashimori A, Otani K, Fukunaga S, Hosomi S, Tanaka F, Nagami Y, Taira K, Tanigawa T, Nakatsu G, Hattori M, Fujiwara Y. Long-term persistence of gastric dysbiosis after eradication of Helicobacter pylori in patients who underwent endoscopic submucosal dissection for early gastric cancer. (2020) Gastric Cancer, Nov 17. doi: 10.1007/s10120-020-01141-w. Epub ahead of print. PMID: 33201352.

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Jonduo ME, Wawae L, Masiria G, Suda W, Hattori M, Takayasu L, Abdad MY, Greenhill AR, Horwood PF, Pomat W, Umezaki M. Gut microbiota composition in obese and non-obese adult relatives from the highlands of Papua New Guinea. FEMS (2020) Microbiol Lett., Oct 16;367(19):fnaa161. doi: 10.1093/femsle/fnaa161. PMID: 33021675.

Yoshifuji K, Inamoto K, Kiridoshi Y, Takeshita K, Sasajima S, Shiraishi Y, Yamashita Y, Nisaka Y, Ogura Y, Takeuchi R, Toya T, Igarashi A, Najima Y, Doki N, Kobayashi T, Ohashi K, Suda W, Atarashi K, Shiota A, Hattori M, Honda K, Kakihana K. Prebiotics protect against acute graft-versus-host disease and preserve the gut microbiota in stem cell transplantation. (2020) Blood Adv., Oct 13;4(19):4607-4617. doi: 10.1182/bloodadvances.2020002604. PMID: 32991720; PMCID: PMC7556149.

Nikoh N, Tsuchida T, Koga R, Oshima K, Hattori M, Fukatsu T. Genome analysis of "Candidatus Regiella insecticola" strain TUt, facultative bacterial symbiont of the Pea Aphid Acyrthosiphon pisum. Microbiol Resour Announc. 2020 Oct 1;9(40):e00598-20. doi: 10.1128/MRA.00598-20.

Miyauchi E, Kim SW, Suda W, Kawasumi M, Onawa S, Taguchi-Atarashi N, Morita H, Taylor TD, Hattori M, Ohno H. Gut microorganisms act together to exacerbate inflammation in spinal cords. (2020) Nature. Sep;585(7823):102-106. doi: 10.1038/s41586-020-2634-9. Epub 2020 Aug 26. PMID: 32848245.

Takewaki D, Suda W, Sato W, Takayasu L, Kumar N, Kimura K, Kaga N, Mizuno T, Miyake S, Hattori M, Yamamura T. Alterations of the gut ecological and functional microenvironment in different stages of multiple sclerosis. (2020) Proc Natl Acad Sci U S A., Sep 8;117(36):22402-22412. doi: 10.1073/pnas.2011703117. Epub 2020 Aug 24. PMID: 32839304; PMCID: PMC7486801.

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Nowak JK, Kałużny Ł, Suda W, Bukowska-Posadzy A, Adams A, Grulkowski I, Kocięcki J, Walkowiak J. Retinal nerve fibre layer thickness associates with phenylketonuria control and cognition. (2020) J Med Genet. Dec;57(12):863-864. doi: 10.1136/jmedgenet-2019-106770. Epub 2020 Jun 26. PMID: 32591341.

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Fujita M, Liu X, Iwasaki Y, Terao C, Mizukami K, Kawakami E, Takata S, Takata S, Inai C, Aoi T, Mizukoshi M, Maejima K, Hirata M, Murakami Y, Kamatani Y, Kubo M, Akagi K, Matsuda K, Nakagawa H, and Momozawa Y. (2021) Population-based screening for hereditary colorectal cancer variants in Japan. Clin Gastroenterol Hepatol. in press.

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Sato Y, Wada I, Odaira K, Kobayashi Y, Hosoi A, Nagaoka K, Karasaki T, Matsushita H, Yagi K, Yamashita H, Fujita M, Watanabe S, Kamatani T, Miya F, Mineno J, Nakagawa H, Tsunoda T, Takahashi S, Seto Y, and Kakimi K. (2020) Integrative immunogenomic analysis of gastric cancer dictates novel immunological classification and the functional status of tumor-infiltrating cells. Clin Transl Immunology 9(10): e1194. doi: 10.1002/cti2.1194

Nagaoka K, Shirai M, Taniguchi K, Hosoi A, Sun C, Kobayashi Y, Maejima K, Fujita M, Nakagawa H, Nomura S, and Kakimi K. (2020) Deep immuno-phenotyping at the single-cell level identifies a combination of anti-IL-17 and checkpoint blockade as an effective treatment in a preclinical model of data-guided personalized immunotherapy. J Immuno Therapy Cancer 8: e001358. doi: 10.1136/jitc-2020-001358

Sasaki N, Iwaya T, Chiba T, Fujita M, Ju Z, Endo F, Yaegashi M, Hachiya T, Sugimoto R, Sugai T, Siwak DR, Liotta LA, Lu Y, Mill GB, Nakagawa H, and Nishizuka S. (2020) Analysis of mutational and proteomic heterogeneity of gastric cancer suggests an effective pipeline for post-treatment tumor burden monitoring using circulating tumor DNA. PLOS One 15(10): e0239966. doi: 10.1371/journal.pone.0239966

Mizukami, Iwasaki Y, Kawakami E, Hirata M, Kamatani Y, Matsuda K, Endo M, Sugano K, Yoshida T, Murakami Y, Nakagawa H, Spurdle AB, and Momozawa Y. (2020) Genetic characterization of pancreatic cancer patients and prediction of carrier status of germline pathogenic variants in cancer-predisposing genes. EBioMed 60:103033. doi: 10.1016/j.ebiom.2020.103033

Bailey MH, Meyerson WU, Dursi LJ, Wang LB, Dong G, Liang WW, Weerasinghe A, Li S, Kelso S; PCAWG novel somatic mutation calling methods working group, Saksena G, Ellrott K, Wendl MC, Wheeler DA, Getz G, Simpson JT, Gerstein MB, Ding L; PCAWG Consortium. (2020) Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nat Commun. 11(1):4748. doi: 10.1038/s41467-020-18151-y

Li CH, Prokopec SD, Sun RX, Yousif F, Schmitz N, PCAWG Tumour Subtypes and Clinical Translation; Boutros PC, PCAWG Consortium. (2020) Sex differences in oncogenic mutational processes. Nat Commun. 11(1):4330. doi: 10.1038/s41467-020-17359-2

Hasegawa T, Hayashi S, Nakagawa H, Miyano S, and Imoto S. (2020) Neoantimon: A multifunctional R package for identification of tumor-specific neoantigens. Bioinformatics 36(18):e1008915. doi: 10.1093/bioinformatics/btaa616

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Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S. Nocardia aurantiaca sp. nov., isolated from soil in Thailand. (2020) International Journal of Systematic and Evolutionary Microbiology, 70(10), 5432-5438. doi: 10.1099/ijsem.0.004432

Liou JS, Huang CH, Ikeyama N, Lee AY, Chen IC, Blom J, Chen CC, Chen CH, Lin YC, Hsieh SY, Huang L, Ohkuma M, Watanabe K, Sakamoto M. Prevotella hominis sp. nov., isolated from human faeces. (2020) International Journal of Systematic and Evolutionary Microbiology, 70(8), 4767–4773. doi: 10.1099/ijsem.0.004342

Noda S, Koyama F, Aihara C, Ikeyama N, Yuki M, Ohkuma M, Sakamoto M. Lactococcus insecticola sp. nov. and Lactococcus hodotermopsidis sp. nov., isolated from the gut of the wood-feeding lower termite Hodotermopsis sjostedti. (2020) International Journal of Systematic and Evolutionary Microbiology, 70(8), 4515-4522. doi: 10.1099/ijsem.0.004309

Ikeyama N, Toyoda A, Morohoshi S, Kunihiro T, Murakami T, Mori H, Iino T, Ohkuma M, Sakamoto M. Amedibacterium intestinale gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium dolichum Moore et al. 1976 (Approved Lists 1980) as Amedibacillus dolichus gen. nov., comb. nov. (2020) International Journal of Systematic and Evolutionary Microbiology, 70(6), 3656-3664. doi: 10.1099/ijsem.0.004215

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Sakamoto, Y., Sato, M. Sato, Y., Harada, A., Suzuki, T., Goto, C., Tamura, K., Toyooka, K., Kimura, H., Ohkawa, Y., Hara-Nishimura, I., Takagi, S. and Matsunaga, S. (2020) Subnuclear gene positioning through lamina association affects copper tolerance. Nature Commun. 11, 5914. doi: 10.1038/s41467-020-19621-z

Watanabe S, Takahashi N, Kanno Y, Suzuki H, Aoi Y, Takeda-Kamiya N, Toyooka K, Kasahara H, Hayashi K, Umeda M, Seo M. (2020) The Arabidopsis NRT1/PTR FAMILY Protein NPF7.3/NRT1.5 is an Indole-3-butyric Acid Transporter Involved in Root Gravitropism. PNAS, 117 31500-31509. doi: 10.1073/pnas.2013305117

Masumoto N, Suzuki Y., Cui S., Wakazaki M., Sato M., Kumaishi K., Shibata A., Furuta MK., Ichihashi Y., Shirasu K, Toyooka K., Sato Y., Yoshida S. Three-dimensional reconstructions of haustoria in two parasitic plant species in the Orobanchaceae. (2021) Plant Physiol. doi: 10.1093/plphys/kiab005

Oikawa K., Imai T., Thagun C., Toyooka K., Yoshizumi T., Ishikawa K., Kodata Y., Numata K. (2021) Mitochondrial movement during its association with chloroplasts in Arabidopsis thaliana Commu Biol. in press

Shimizu Y., Takagi J., Ito E., Ito Y., Ebine K., Komatsu Y., Goto Y., Sato M., Toyooka K., Ueda T, Kurikawa K., Uemura T., Nakano A. (2021) Cargo sorting zones in the trans-Golgi network visualized by super-resolution confocal live imaging microscopy in plants. Nature Commun. in press

Matsui T., Kadono-Maekubo N, Suzuki Y., Furuichi Y., Shiraga K., Sasaki H., Ishida A., Takahashi S., Okada T., Toyooka K., Sharif J., Abe T., Kiyonari H., Tominaga M., Miyawaki A ., Amagai M. (2021) A unique mode of keratinocyte death requires intracellular acidification. PNAS. in press.

豊岡公徳, 若崎眞由美, 宮彩子, 佐藤繭子 (2020) 切片 SEM 観察法の植物試料への応用顕微鏡 55(1) 7-12. doi: 10.11410/kenbikyo.55.1_7

豊岡公徳，若崎眞由美，武田紀子，佐藤繭子 (2020) 走査電子顕微鏡を用いた植物組織・細胞の新しい捉え方 Plant Morphology 32 3-9. doi: 10.5685/plmorphol.32.3

豊岡公徳 MirrorCLEM:シームレスな光-電子相関顕微鏡観察システム The HITACHI Scientific Instrument News 63(1) 5533-5528

Toyooka K. MirrorCLEM: A Seamless System for Correlative Light and Electron Microscopy. The HITACHI Scientific Instrument News Vol.15 September (2020)

Horinouchi, T., Maeda, T., Kotani, H., Furusawa, C. Suppression of antibiotic resistance evolution by single-gene deletion. (2020) Scientific Reports 10(1), 4178. doi: 10.1038/s41598-020-60663-6

Maeda, T., Iwasawa, J., Kotani, H., Sakata, N., Kawada, M., Horinouchi, T., Sakai, A., Tanabe, K., Furusawa, C. High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coli. (2020) Nature Communications. 11(1), 5970. doi: 10.1038/s41467-020-19713-w

Furusawa, C., Irie I. Toward understanding of evolutionary constraints: experimental and theoretical approaches. (2020) Biophysical Reviews 12(5), 1155-1161. doi: 10.1007/s12551-020-00708-2

Horinouchi, T., Furusawa, C. Understanding metabolic adaptation by using bacterial laboratory evolution and trans-omics analysis. (2020) Biophysical Reviews 12(3), 677-682. doi: 10.1007/s12551-020-00695-4

Ohbayashi, R., Hirooka, S., Onuma, R., Kanesaki, Y., Hirose, Y., Kobayashi, Y., Fujiwara, T., Furusawa, C., Miyagishima, S-Y. Evolutionary changes in DnaA-dependent chromosomal replication in Cyanobacteria. (2020) Front. Microbiol., 11, 786. doi: 10.3389/fmicb.2020.00786

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List of Publications 20202019 2018 2017

List of Publications 2020
2019 2018 2017