List of Publications 2019
2020 2018 2017
Tanoue T, Morita S, Plichta DR, Skelly AN, Suda W, Sugiura Y, Narushima S, Vlamakis H, Motoo I, Sugita K, Shiota A, Takeshita K, Yasuma-Mitobe K, Riethmacher D, Kaisho T, Norman JM, Mucida D, Suematsu M, Yaguchi T, Bucci V, Inoue T, Kawakami Y, Olle B, Roberts B, Hattori M, Xavier RJ, Atarashi K, Honda K. A defined commensal consortium elicits CD8 T cells and anti-cancer immunity. (2019) Nature, 565, 600-605. doi: 10.1038/s41586-019-0878-z
Soyano, T., Shimoda, Y., Kawaguchi, M., Hayashi, M. A shared gene drives lateral root development and root nodule symbiosis pathways in Lotus. (2019) Science. 366: 1021-1023. doi: 10.1126/science.aax2153
Yoshida, S., Kim, S., Wafula, E. K., Tanskanen, J., Kim, Y. M., Honaas, L., Yang, Z., Spallek, T., Conn, C. E., Ichihashi, Y., Cheong, K., Cui, S., Der, J. P., Gundlach, H., Jiao, Y., Hori, C., Ishida, J. K., Kasahara, H., Kiba, T., Kim, M. S., Koo, N., Laohavisit, A., Lee, Y. H., Lumba, S., McCourt, P., Mortimer, J. C., Mutuku, J. M., Nomura, T., Sekimoto, Y. S., Seto, Y., Wang, Y., Wakatake, T., Sakakibara, H., Demura, T., Yamaguchi, S., Yoneyama, K., Manabe, R., Nelson, D. C., Schulman, A. H., Timko, M. P., dePamphilis, C. W., Choi, D., and Shirasu, K. Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism. (2019) Curr. Biol. 29: 3041-3052.E4. doi: 10.1016/j.cub.2019.07.086
Tsugawa, H*., Nakabayashi, R*., Mori, T., Yamada, Y., Takahashi, M., Rai, A., Sugiyama, R., Yamamoto, H., Nakaya, T., Yamazaki, M., Kooke, R., Bac-Molenaar, A. J., Oztolan-Erol, N., Keurentjes, J.B. J., Arita, M., and Saito, K. * equally contributed. A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms. (2019) Nat. Methods, 16, 295-298. doi: s41592-019-0358-2
Ali, A., Abouleila, Y., Germond, A. An Integrated Raman Spectroscopy and Mass Spectrometry Platform to Study Single-Cell Drug Uptake, Metabolism, and Effect. (2019) JoVE (in press)
Ali, A., Abouleila, Y., Shimizu, Y., Hiyama, E., Watanabe, M. T., Yanagida, T., Germond, A. Single-cell screening of tamoxifen abundance and effect using mass spectrometry and Raman-spectroscopy. (2019) Analytical Chemistry. doi: 10.1021/acs.analchem.8b04393
Shimizu, Y., Abouleila, Y., Ali, A., Onidani, K., Watanabe, M. T., Germond, A., Honda, K. Metabolome Analysis by Single-Cell Mass Spectrometry. (2019) Proteome letters, 4: 1 pp 1-7. doi: 10.14889/jpros.4.1_1
Nakabayashi, R., Hashimoto, K., Toyooka, K., Saito, K. Keeping the shape of plant tissue for visualizing metabolite features in segmentation and correlation analysis of imaging mass spectrometry in Asparagus officinalis. (2019) Metabolomics, 15, 24. doi: 10.1007/s11306-019-1486-5
Yonekura-Sakakibara, K., Higashi, Y., Nakabayashi, R. The origin and evolution of plant flavonoid metabolism. (2019) Front. Plant Sci., 10, 943. doi: 10.3389/fpls.2019.00943
Kato, S., Hirai, M., Ohkuma, M., Suzuki, K. Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo Seamount as revealed by metagenomics. (2019) PLoS One 14(11): e0224888. doi: 10.1371/journal.pone.0224888
Kuncharoen, N., Kudo, T., Yuki, M., Ohkuma, M., Booncharoen, A., Tanasupawat, S. Micromonospora musae sp. nov., an endophytic actinomycete isolated from roots of Musa species. (2019) Systematic and Applied Microbiology, 42(6):126020. doi: 10.1016/j.syapm.2019.126020
Kato, S., Itoh, T., Yuki, M., Nagamori, M., Ohnishi, M., Uematsu, K., Suzuki, K., Takashina, T., Ohkuma, M. Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring. (2019) The ISME Journal, 13(10): 2465-2474. doi: 10.1038/s41396-019-0447-3
Kuncharoen, N., Kudo, T., Yuki, M., Okuma, M., Pittayakhajonwut, P., Tanasupawat, S. Micromonospora radicis sp. nov., isolated from roots of Azadirachta indica var. siamensis Valenton, and reclassification of Jishengella zingiberis as Micromonospora zingiberis comb. nov. (2019) International Journal of Systematic and Evolutionary Microbiology, 69(9): 2884-2891. doi: 10.1099/ijsem.0.003574
Kunthiphun, S., Wattanagonniyom, T., Endoh, R., Takashima, M., Ohkuma, M., Tanasupawat, S., Savarajara, A. Heterocephalacria mucosa sp. nov., a new basidiomycetous yeast species isolated from a mangrove forest in Thailand. (2019) International Journal of Systematic and Evolutionary Microbiology, 69(9): 2823-2827. doi: 10.1099/ijsem.0.003562
Kato, S., Nakano, S., Kouduka, M., Hirai, M., Suzuki, K., Itoh, T., Ohkuma, M., Suzuki, Y. Metabolic potential of as-yet-uncultured archaeal lineages of Candidatus Hydrothermarchaeota thriving in deep-sea metal sulfide deposits. (2019) Microbes and Environments, 34(3):293-303. doi: 10.1264/jsme2.ME19021
Hirao, S. A., Imai, R., Endoh, R., Ohkuma, M., Degawa, Y. Draft genome sequence of novel Metschnikowia sp. strain JCM 33374, a nectar yeast isolated from a bumblebee. (2019) Microbiology Resource Announcements, 8(37): e00704-19. doi: 10.1128/MRA.00704-19
Sriswasdi, S., Takashima, M., Manabe, RI., Ohkuma, M., Iwasaki, W. Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi. (2019) Communications Biology, 2: 263. doi: 10.1038/s42003-019-0515-2
Maejima, Y., Iino, T., Muraguchi, Y., Ohkuma, M., Kimbara, K., Shintani, M. Algoriphagus sanaruensis sp. nov., a member of the family Cyclobacteriaceae, isolated from a brackish lake in Hamamatsu, Japan. (2019) International Journal of Systematic and Evolutionary Microbiology, 69(7): 2108-2113. doi: 10.1099/ijsem.0.003447
Takashima, M., Manabe, RI., Nishimura, Y., Endoh, R., Ohkuma, M., Sriswasdi, S., Sugita, T., Iwasaki, W. Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales. (2019) Fungal Genetics and Biology, 130: 31-42. doi: 10.1016/j.fgb.2019.04.013
Ikeyama, N., Ohkuma, M., Sakamoto, M. Draft genome sequence of Mesosutterella multiformis JCM 32464T, a member of the family Sutterellaceae, isolated from human feces. (2019) Microbiology Resource Announcements, 8(24): e00478-19. doi: 10.1128/MRA.00478-19
Takashima, M., Manabe, RI., Ohkuma, M. Draft genome sequences of Basidiomycetous epiphytic phylloplane yeast type strains Dioszegia crocea JCM 2961 and Dioszegia aurantiaca JCM 2956. (2019) Microbiology Resource Announcements, 8(26): e01727-18. doi: 10.1128/MRA.01727-18
Kunthiphun, S., Endoh, R., Takashima, M., Ohkuma, M., Tanasupawat, S., Savarajara, A. Prototheca paracutis sp. nov., a novel oleaginous achlorophyllous microalga isolated from a mangrove forest. (2019) Mycoscience 60(3): 165-169. doi: 10.1016/j.myc.2019.02.003
Sakamoto, M., Ikeyama, N., Murakami, T., Mori, H., Yuki, M., Ohkuma, M. Comparative genomics of Parolsenella catena and Libanicoccus massiliensis: Reclassification of Libanicoccus massiliensis as Parolsenella massiliensis comb. nov. (2019) International Journal of Systematic and Evolutionary Microbiology, 69(4): 1123-1129. doi: 10.1099/ijsem.0.003283
Dekio, I., McDowell, A., Sakamoto, M., Tomida, S., Ohkuma, M. Proposal of new combination, Cutibacterium acnes subsp. elongatum comb. nov., and emended descriptions of the genus Cutibacterium, Cutibacterium acnes subsp. acnes and Cutibacterium acnes subsp. defendens. (2019) International Journal of Systematic and Evolutionary Microbiology, 69(4): 1087-1092. doi: 10.1099/ijsem.0.003274
Tohno, M., Tanizawa, Y., Kojima, Y., Sakamoto, M., Nakamura, Y., Ohkuma, M., Kobayashi, H. Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates. (2019) International Journal of Systematic and Evolutionary Microbiology, 69(4): 964-969. doi: 10.1099/ijsem.0.003224
Nishimura, Y., Shiratori, T., Ishida, KI., Hashimoto, T., Ohkuma, M., Inagaki, Y. Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127. (2019) Scientific Reports, 9(1): 4850. doi: 10.1038/s41598-019-41238-6
Ridwan, R., Rusmana, I., Widyastuti, Y., Wiryawan, G. K., Prasetya, B., Sakamoto, M., Ohkuma, M. Bacteria and methanogen community in the rumen fed different levels of grass-legume silages. (2019) Biodiversitas 20: 1055-1062. doi: 10.13057/biodiv/d200417
Kobayashi, H., Tanizawa, Y., Sakamoto, M., Nakamura, Y., Ohkuma, M., Tohno, M. Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994. (2019) International Journal of Systematic and Evolutionary Microbiology, 69(2): 417-421. doi: 10.1099/ijsem.0.003160
Shintani, M., Ohkuma, M., Kimbara, K. High-resolution comparison of bacterial conjugation frequencies. (2019) Journal of Visualized Experiments, 143: e57812. doi: 10.3791/57812
Kuncharoen, N., Kudo, T., Ohkuma, M., Tanasupawat, S. Micromonospora azadirachtae sp. nov., isolated from roots of Azadirachta indica A. Juss. var. siamensis Valeton. (2019) Antonie van Leeuwenhoek 112(2): 253-262. doi: 10.1007/s10482-018-1152-3
Ogata, Y., Suda, W., Hattori, M., Ohkuma, M., Sakamoto, M. Complete genome sequence of Phascolarctobacterium faecium JCM 30894, isolated from human feces. (2019) Microbiology Resource Announcements, 8(3): e01487-18. doi: 10.1128/MRA.01487-18
Murakami, T., Onouchi, S., Igai, K., Ohkuma, M., Hongoh, Y. Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis. (2019) FEMS Microbiology Ecology, 95(2): fiy238. doi: 10.1093/femsec/fiy238
Utami, D. Y., Kuwahara, H., Igai, K., Murakami, T., Sugaya, K., Morikawa, T., Nagura, Y., Yuki, M., Deevong, P., Inoue, T., Kihara, K., Lo, N., Yamada, A., Ohkuma, M., Hongoh, Y. Genome analyses of uncultured TG2/ZB3 bacteria in 'Margulisbacteria' specifically attached to ectosymbiotic spirochetes of protists in the termite gut. (2019) The ISME Journal, 13(2): 455–467. doi: 10.1038/s41396-018-0297-4
Sakamoto, M., Ikeyama, N., Kunihiro, T., Iino, T., Yuki, M., Ohkuma, M. Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megasphaeroides sp. nov., isolated from human faeces. (2018) International Journal of Systematic and Evolutionary Microbiology, 68(12): 3942-3950. doi: 10.1099/ijsem.0.003096
Noda, S., Sakamoto, M., Aihara, C., Yuki, M., Katsuhara, M., Ohkuma, M. Lactococcus termiticola sp. nov., isolated from the gut of the wood-feeding higher termite Nasutitermes takasagoensis. (2018) International Journal of Systematic and Evolutionary Microbiology, 68(12): 3832-3836. doi: 10.1099/ijsem.0.003068
Sakamoto, M., Ikeyama, N., Yuki, M., Ohkuma, M. Draft genome sequence of Faecalimonas umbilicata JCM 30896T, an acetate-producing bacterium isolated from human feces. (2018) Microbiology Resource Announcements, 7 (9): e01091-18. doi: 10.1128/MRA.01091-18
Sugiyama, Y., Nagashima, Y., Wakazaki, M., Sato M., Toyooka, K., Fukuda, H., Oda, Y. A Rho-actin signaling pathway shapes cell wall boundaries in Arabidopsis xylem vessels. (2019) Nature Communication 10, 468. doi: s41467-019-08396-7
Usui, K., Kadono, N., Furuichi, Y., Shiraga, K., Saitou, T., Kawasaki, H., Toyooka, K., Tamura, H., Kubo, A., Amagai, M., Matsui, T. 3D in vivo imaging of the keratin filament network in the mouse stratum granulosum reveals profilaggrin-dependent regulation of keratin bundling. (2019) J Dermatol Sci. 94(3):346-349. doi: 10.1016/j.jdermsci.2019.04.006
Ito-Inaba, Y., Sato, M., Sato, MP., Kurayama, Y., Yamamoto, H., Ohata, M., Ogura, Y., Hayashi, T., Toyooka, K., Inaba, T. Alternative Oxidase Capacity of Mitochondria in Microsporophylls May Function in Cycad Thermogenesis. (2019) Plant Physiol. 180(2):743-756. doi: 10.1104/pp.19.00150
Toyooka K, Shinozaki-Narikawa N. Efficient fluorescence recovery using antifade reagents in correlative light and electron microscopy. (2019) Microscopy, 68(5) 417-421. doi: 10.1093/jmicro/dfz029
Hiwatashi T, Goh H, Yasui Y, Koh LQ, Takami H, Kajikawa M, Kirita H, Kanazawa T, Minamino N, Togawa T, Sato M, Wakazaki M, Yamaguchi K, Shigenobu S, Fukaki H, Mimura T, Toyooka K, Sawa S, Yamato KT, Ueda T, Urano D, Kohchi T, Ishizaki K. The RopGEF KARAPP*O Is Essential for the Initiation of Vegetative Reproduction in Marchantia polymorpha. (2019) Current biology : CB 29(20) 3525-3531.e7. doi: 10.1101/385682
Kato S, Ozasa K, Maeda M, Tanno Y, Tamaki S, Higuchi-Takeuchi M, Numata K, Kodama Y, Sato M, Toyooka K, Shinomura T. Carotenoid in the eyespot apparatus is required for triggering phototaxis in Euglena gracilis. (2019) Plant journal : for cell and molecular biology (in press)
Naramoto S, Jones VAS, Trozzi N, Sato M, Toyooka K, Shimamura M,Ishida S, Nishitani K, Ishizaki K, Nishihama R, Kohchi T, Dolan L and Kyozuka J.A conserved regulatory mechanism mediates the convergent evolution of plant shoot lateral organs. PLOS Biology (in press)
Kim SG, Becattini S, Moody TU, Shliaha PV, Littmann ER, Seok R, Gjonbalaj M, Eaton V, Fontana E, Amoretti L, Wright R, Caballero S, Wang ZX, Jung HJ, Morjaria SM, Leiner IM, Qin W, Ramos RJJF, Cross JR, Narushima S, Honda K, Peled JU, Hendrickson RC, Taur Y, van den Brink MRM, Pamer EG. Microbiota-derived lantibiotic restores resistance against vancomycin-resistant Enterococcus (2019) Nature, 572, :665-669. doi: 10.1038/s41586-019-1501-z
Skelly AN, Sato Y, Kearney S, Honda K. Mining the microbiota for microbial and metabolite-based immunotherapies. (2019) Nat Rev Immunol, 19, 305-323. doi: 10.1038/s41577-019-0144-5
Ladinsky MS, Araujo LP, Zhang X, Veltri J, Galan-Diez M, Soualhi S, Lee C, Irie K, Pinker EY, Narushima S, Bandyopadhyay S, Nagayama M, Elhenawy W, Coombes BK, Ferraris RP, Honda K, Iliev ID, Gao N, Bjorkman PJ, Ivanov II. Endocytosis of commensal antigens by intestinal epithelial cells regulates mucosal T cell homeostasis. (2019) Science, 363, pii: eaat4042. doi: 10.1126/science.aat4042
Kanoh N., Kawamata A., Suzuki K., Takahashi Y., Miyazawa T., Nakamura T., Moriya T., Hirano H., Osada H., Iwabuchi Y., and Takahashi S. An integrated cytochrome P450 substrate screening system enables the analysis of transition in the global substrate selectivity of engineered P450 BM3 mutants. Sci. Rep. (in press)
Panthee S., Takahashi S.*, Hayashi T., Shimizu T, and Osada H.* β-carboline biomediators induce reveromycin production in Streptomyces sp. SN-593. Sci. Rep. 9 (1): 5802, 2019. doi: 10.1038/s41598-019-42268-w. *Corresponding
Kim J.W., Son S., Kim G.S., Otaka J., Miura Y., Muranaka A., Uchiyama M., Lee J.-S., Jang M., Ko S.-K., Takahashi S., Osada H., Jang J.-H., Ahn J.S. Aromatic butenolides produced by a soil ascomycete Auxarthron sp. KCB15F070 derived from a volcanic island. Tetrahedron Lett. 60 (45): 7, 151227, 2019. doi: 10.1016/j.tetlet.2019.151227
Hashimoto T., Hashimoto J., Kozone I., Amagai K., Kawahara T., Takahashi S., Ikeda H., Shin-ya K. Biosynthesis of quinolidomicin, the largest known macrolide of terrestrial origin: Identification and heterologous expression of a biosynthetic gene cluster over 200 kb. Org. Lett. 20 (24): 7996-7999, 2018. doi: 10.1021/acs.orglett.8b03570
Yazaki, J., Kawashima, Y., Ogawa, T., Kobayashi, A., Okoshi, M., Watanabe, T., Yoshida, S., Kii, I., Egami, S., Amagai, M., Hosoya, T., Shiroguchi, K., Ohara, O. HaloTag-based conjugation of proteins to barcoding-oligonucleotides. (2019) Nucleic Acids Research, gkz1086. doi: 10.1093/nar/gkz1086
Motoyama, T., Nogawa, T., Hayashi, T., Hirota, H., Osada, H. Induction of nectriapyrone biosynthesis in the rice blast fungus Pyricularia oryzae by disturbance of the two-component signal transduction system. (2019) Chembiochem, 20, 693-700. doi: 10.1002/cbic.201800620
Nogawa, T., Kawatani, M., Okano, A., Futamura, Y., Aono, H., Shimizu, T., Kato, N., Kikuchi, H., Osada, H. Structure and biological activity of Metarhizin C, a stereoisomer of BR-050 from Tolypocladium album RK17-F0007. (2019) Journal of Antibiotics, 72, 996-1000. doi: 10.1038/s41429-019-0229-1
Simpkins, W. S., Deshpande, R., Nelson, J., Li, C. S., Piotrowski, S. J., Ward, N. H., Yashiroda, Y., Osada, H., Yoshida, M., Boone, C., Myers, L. C., Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments. (2019) Nature Protocols, 14, 415-440. doi: 10.1038/s41596-018-0099-1
Panthee, S., Takahashi, S., Hayashi, T., Shimizu, T., Osada, H. β-carboline biomediators induce reveromycin production in Streptomyces sp. SN-593. (2019) Scientific Reports, 9, 5802. doi: 10.1038/s41598-019-42268-w
Lopez, V. J.A., Nogawa, T., Futamura, Y., Shimizu, T., Osada, H. Nocardamin glucuronide, a new member of the ferrioxamine siderophores isolated from the ascamycin-producing strain Streptomyces sp. 80H647. (2019) Journal of Antibiotics, 72, 991-995. doi: 10.1038/s41429-019-0217-5
Yamamoto, K., Futamura, Y., Uson-Lopez, A. R., Aono, H., Shimizu, T., Osada, H. YO-001A, a new antifungal agent produced by Streptomyces sp. YO15-A001. (2019) Journal of Antibiotics, 72, 986-990. doi: 10.1038/s41429-019-0239-z
Suzuki K, Vogelzang A, & Fagarasan S (2019) MZB1 folding and unfolding the role of IgA. Proc Natl Acad Sci U S A 116(27):13163-13165. doi: 10.1073/pnas.1908012116
Vogelzang A, Guerrini MM, Minato N, & Fagarasan S (2018) Microbiota - an amplifier of autoimmunity. Curr Opin Immunol 55:15-21. doi: 10.1016/j.coi.2018.09.003
Guerrini MM, Vogelzang A, & Fagarasan S (2018) A Hen in the Wolf Den: A Pathobiont Tale. Immunity 48(4):628-631. doi: 10.1016/j.immuni.2018.04.003
Wu, J., Ichihashi, Y., Suzuki, T., Shibata, A., Shirasu, K., Yamaguchi, N., Ito, T. (2019) Abscisic acid-dependent histone demethylation during postgermination growth arrest in Arabidopsis. (2019) Plant Cell Environ. 42(7): 2198-2214. doi: 10.1111/pce.13547
Lee, H. Z., Tatsumi, Y., Ichihashi, Y., Suzuki, T., Shibata, A., Shirasu, K., Yamaguchi, N., Ito, T. CRABS CLAW and SUPERMAN Coordinate Hormone-, Stress-, and Metabolic-Related Gene Expression During Arabidopsis Stamen Development. (2019) Front. Ecol. Evol. doi: 10.3389/fevo.2019.00437
Sato, T., Hachiya, S., Inamura, N., Ezawa, T., Cheng, W., Tawaraya, K. Secretion of acid phosphatase from extraradical hyphae of the arbuscular mycorrhizal fungus Rhizophagus clarus is regulated in response to phosphate availability. (2019) Mycorrhiza. doi: 10.1007/s00572-019-00923-0
Bramson, A., Baland, A., Iriki, A. Measuring Dynamical Uncertainty with Revealed Dynamics Markov Models. (2019) Front Appl Math Stats, 5, article 7, doi: 10.3389/fams.2019.00007
Lin, M.K., Takahashi, Y.S., Huo, B.X., Hanada, M., Nagashima, J., Hata, J., Tolpygo, A.S., Ram, K., Lee, B., Miller, M., Rosa, M.G.P., Sasaki, E., Iriki, A., Okano, H., Mitra, P.P. A High-throughput Neurohistological Pipeline for Brain-Wide Mesoscale Connectivity Mapping of the Common Marmoset. (2019) eLife, 8, e40042. doi: 10.7554/eLife.40042
Gumert, M.D., Tan, A., Luncz, L., Chua, C.T., Kulik, L., Switzer, A., Haslam, M., Iriki, A., Malaivijitnond S. Prevalence of tool behaviour is associated with pelage phenotype in intraspecific hybrid long-tailed macaques (Macaca fascicularis aurea x M. f. fascicularis). (2019) Behav, 156, 1083-1125. doi: 10.1163/1568539X-00003557
Kosugi, A., Castagnola, E., Carli, S., Ricci, D., Fadiga, L., Taoka, M., Iriki, A., Ushiba, J. Fast electrophysiological mapping of rat cortical motor representation on a time scale of minutes during skin stimulation. (2019) Neurosci., 414,245-254. doi: 10.1016/j.neuroscience.2019.07.011
Tramacere, A., Wada, K., Okanoya, K., Iriki, A., Ferrari, P.F. Auditory-motor matching in vocal recognition and imitative learning. (2019) Neurosci, 409, 222-234. doi: 10.1016/j.neuroscience.2019.01.056
Bretas, R.V., Taoka, M., Suzuki, H., Iriki, A. Secondary somatosensory cortex of primates: Beyond body maps, towards conscious “self-in-the-world” map. (2020) Exp Brain Res, in press.
Bretas, R.V., Yamazaki, Y., Iriki, A. Phase Transitions of Brain Evolution that Produced Human Language..., and Beyond. (2020) Neurosci Res, in press.
Yi X, Son S, Ando R, Miyawaki A, Weiss S (2019). Moments reconstruction and local dynamic range compression of high order super-resolution optical fluctuation imaging. Biomed. Opt. Express. 10, 2430-2445. doi: 10.1364/BOE.10.002430
Margarete Diaz-Cuadros, Daniel E. Wagner, Christoph Budjan, Alexis Hubaud, Oscar A. Tarazona, Sophia Donelly, Arthur Michaut, Ziad Al Tanoury, Kumiko Yoshioka-Kobayashi, Yusuke Niino, Ryoichiro Kageyama, Atsushi Miyawaki, Jonathan Touboul, and Olivier Pourquié. In vitro characterization of the human segmentation clock. Nature in press.
Kumiko Yoshioka-Kobayashi, Marina Matsumiya, Yusuke Niino, Akihiro Isomura, Hiroshi Kori, Atsushi Miyawaki, and Ryoichiro Kageyama. Dynamic control of coupling delay for synchronized oscillations in the segmentation clock. Nature in press.
Nakamoto N, Sasaki N, Aoki R, Miyamoto K, Suda W, Teratani T, Suzuki T, Koda Y, Chu PS, Taniki N, Yamaguchi A, Kanamori M, Kamada N, Hattori M, Ashida H, Sakamoto M, Atarashi K, Narushima S, Yoshimura A, Honda K, Sato T, Kanai T. Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis. Nat Microbiol. 4(3): 492–503 (2019). doi: 10.1038/s41564-018-0333-1
Ohtsu A, Takeuchi Y, Katagiri S, Suda W, Maekawa S, Shiba T, Komazaki R, Udagawa S, Sasaki N, Hattori M, Izumi Y. Influence of Porphyromonas gingivalis in gut microbiota of streptozotocin-induced diabetic mice. Oral Dis. 25(3): 868–880 (2019). doi: 10.1111/odi.13044
Ikeda E, Shiba T, Ikeda Y, Suda W, Nakasato A, Takeuchi Y, Azuma M, Hattori M, Izumi Y. Deep sequencing reveals specific bacterial signatures in the subgingival microbiota of healthy subjects. Cli Oral Investig. 23(3): 1489–1493 (2019). doi: 10.1007/s00784-019-02805-3
Song J, Kang I, Joung Y, Yoshizawa S, Kaneko R, Oshima K, Hattori M, Hamasaki K, Kogure K, Kim S, Lee K, Cho JC. Genome analysis of Rubritalea profundi SAORIC-165T, the first deep-sea verrucomicrobial isolate, from the northwestern Pacific Ocean. J Microbiol. 57(5): 413–422 (2019). doi: 10.1007/s12275-019-8712-8
Nagata N, Tohya M, Fukuda S, Suda W, Nishijima S, Takeuchi F, Ohsugi M, Tsujimoto T, Nakamura T, Shimomura A, Yanagisawa N, Hisada Y, Watanabe K, Imbe K, Akiyama J, Mizokami M, Miyoshi-Akiyama T, Uemura N, Hattori M. Effects of bowel preparation on the human gut microbiome and metabolome. Sci Rep. 9(1): 4042 (2019). doi: 10.1038/s41598-019-40182-9
Nikoh N, Koga R, Oshima K, Hattori M, Fukatsu T. Genome Sequence of "Candidatus Serratia symbiotica" Strain IS, a Facultative Bacterial Symbiont of the Pea Aphid Acyrthosiphon pisum. Microbiol Resour Announc. 8(19) (2019). doi: 10.1128/MRA.00272-19
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