2017 of Integrated Symbiology

List of Publications 2017
2020 2019 2018

Atarashi, K., Suda, W., Luo, C., Kawaguchi, T., Motoo, I., Narushima, S., Kiguchi, Y., Yasuma, K., Watanabe, E., Tanoue, T., Thaiss, C.A., Sato, M., Toyooka, K., Said, H.S., Yamagami, H., Rice, S.A., Gevers, D., Johnson, R.C., Segre, J.A., Chen, K., Kolls, J.K., Elinav, E., Morita, H., Xavier, R.J., Hattori, M., Honda, K. Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation. (2017) Science, 358, 359-365. doi:10.1126/science.aan4526

Piotrowski, J. S., Li, S. C., Deshpande, R., Simpkins, S. W., Nelson, J., Yashiroda, Y., Barber, J. M., Safizadeh, H., Wilson, E., Okada, H., Gebre, A. A., Kubo, K., Torres, N. P., LeBlanc, M. A., Andrusiak, K., Okamoto, R., Yoshimura, M., van Leeuwen, J., Shirahige, K., Baryshnikova, A., Brown, G. W., Hirano, H., Costanzo, M., Andrews, B., Ohya, Y., Osada, H., Yoshida, M., Myers, C. L., Boone, C. Functional Annotation of Chemical Libraries across Diverse Biological Processes. (2017) Nature Chemical Biology, 13, 982-993. doi:10.1038/nchembio.2436

Sakaue-Sawano A, Yo M, Komatsu N, Hiratsuka T, Kogure T, Hoshida T, Goshima N, Matsuda M, Miyoshi H, Miyawaki A. Genetically Encoded Tools for Optical Dissection of the Mammalian Cell Cycle. (2017) Molecular Cell, 68: 626-640. doi: 10.1016/j.molcel.2017.10.001

Chai JN, Peng Y, Rengarajan S, Solomon BD, Ai TL, Shen Z, Perry JSA, Knoop KA, Tanoue T, Narushima S, Honda K, Elson CO, Newberry RD, Stappenbeck TS, Kau AL, Peterson DA, Fox JG, Hsieh CS. Helicobacter species are potent drivers of colonic T cell responses in homeostasis and inflammation. (2017) Science Immunol. 2(13). pii: eaal5068. doi: 10.1126/sciimmunol.aal5068. PMID: 28733471

Miyamoto A, Lee S, Cooray NF, Lee S, Mori M, Matsuhisa N, Jin H, Yoda L, Yokota T, Itoh A, Sekino M, Kawasaki H, Ebihara T, Amagai M, Someya T. Inflammation-free, gas-permeable, lightweight, stretchable on-skin electronics with nanomeshes. (2017) Nature Nanotechnol,12: 907-913. doi: 10.1038/nnano.2017.125

Costea, PI., Zeller, G., Sunagawa, S., Pelletier, E., Alberti, A., Levenez, F., Tramontano, M., Driessen, M., Hercog, R., Jung, FE., Kultima, JR., Hayward, MR., Coelho, LP., Allen-Vercoe, E., Bertrand, L., Blaut, M., Brown, JRM., Carton, T., Cools-Portier, S., Daigneault, M., Derrien, M., Druesne, A., de Vos, WM., Finlay, BB., Flint, HJ., Guarner, F., Hattori, M., Heilig, H., Luna, RA., van Hylckama Vlieg, J., Junick, J., Klymiuk, I., Langella, P., Le Chatelier, E., Mai, V., Manichanh, C., Martin, JC., Mery, C., Morita, H., O'Toole, PW., Orvain, C., Patil, KR., Penders, J., Persson, S., Pons, N., Popova, M., Salonen, A., Saulnier, D., Scott, KP., Singh, B., Slezak, K., Veiga, P., Versalovic, J., Zhao, L., Zoetendal, EG., Ehrlich, SD., Dore, J., Bork, P. Towards standards for human fecal sample processing in metagenomic studies. (2017) Nat Biotechnol., 35, 1069-1076. doi: 10.1038/nbt.3960.

Chujo, T., Yamazaki, T., Kawaguchi, T., Kurosaka, S., Takumi, T., Nakagawa, S., Hirose, T. Unusual semi-extractability as a hallmark of nuclear body-associated architectural noncoding RNAs. (2017) EMBO Journal, 36, 1447-1462. doi: 10.15252/embj.201695848.

Shimokawa, C., Kanaya, T., Hachisuka, M., Ishiwata, K., Hisaeda, H., Kurashima, Y., Kiyono, H., Yoshimoto, T., Kaisho, T., Ohno, H. Mast Cells Are Crucial for Induction of Group 2 Innate Lymphoid Cells and Clearance of Helminth Infections. (2017) Immunity 46, 863-874. doi: 10.1016/j.immuni.2017.04.017.

Nakanishi, M., Nomura, J., Ji, X., Tamada, K., Arai, T., Takahashi, E., Bućan, M., Takumi, T. Functional significance of rare neuroligin 1 variants found in autism. (2017)PLoS Genetics, 13, e1006940. doi: 10.1371/journal.pgen.1006940.

Azzi, A., Evans, J.A., Leise, T., Myung, J., Takumi, T., Davidson, A.J., Brown, S.A. Network dynamics mediate circadian clock plasticity. (2017)Neuron, 93, 441-450. doi: 10.1016/j.neuron.2016.12.022.

Kuwahara, H., Yuki, M., Izawa, K., Ohkuma, M., Hongoh, Y. Genome of ‘Ca. Desulfovibrio trichonymphae’, an H2-oxidizing bacterium in sa tripartite symbiotic system within a protist cell in the termite gut. (2017) The ISME Journal, 11, 766-776. doi: 10.1038/ismej.2016.143

Nakazawa, S., Haramiishi, A., Fukuda, K., Kanayama, Y., Watanabe, T., Yuki, M., Ohkuma, M, Takeda, K., Kimbara, K., Shintani, M. Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions. (2017) PLoS ONE, 12, e0186248. doi: 10.1371/journal.pone.0186248

Kamo, T., Akazawa, H., Suda, W., Saga-Kamo, A., Shimizu, Y., Yagi, H., Liu, Q., Nomura, S., Naito, AT., Takeda, N., Harada, M., Toko, H., Kumagai, H., Ikeda, Y., Takimoto, E., Suzuki, JI., Honda, K., Morita, H., Hattori, M., Komuro, I. Dysbiosis and compositional alterations with aging in the gut microbiota of patients with heart failure. (2017) PLoS One, 12, e0174099. doi: 10.1371/journal.pone.0174099.

Takayasu, L., Suda, W., Watanabe, E., Fukuda, S., Takanashi, K., Ohno, H., Takayasu, M., Takayasu, H., Hattori, M. A 3-dimensional mathematical model of microbial proliferation that generates the characteristic cumulative relative abundance distributions in gut microbiomes. (2017) PLoS One, 12, e0180863. doi: 10.1371/journal.pone.0180863.

Tanaka, M., Endo, S., Kotake, F., Al-Saari, N., Amin, AKMR., Feng, G., Mino, S., Doi, H., Ogura, Y., Hayashi, T., Suda, W., Hattori, M., Yumoto, I., Sawabe, T., Sawabe, T., Araki, T. Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed. (2017) PLoS One, 12, e0180053. doi: 10.1371/journal.pone.0180053.

Nishita, M., Park, S.Y., Nishio, T., Kamizaki, K., Wang, Z., Tamada, K., Takumi, T., Hashimoto, R., Otani, H., Pazour, G.J., Hsu, V.W., Minami, Y. Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness. (2017)Scientific Reports, 7, 1. doi: 10.1038/s41598-016-0028-x.

Lewis, K.E., Sharan, K., Takumi, T., Yadav, V.K. Skeletal site-specific changes in bone mass in a genetic mouse model for human 15q11-13 duplication seen in autism. (2017)Scientific Reports, 7, 9902. doi: 10.1038/s41598-017-09921-8.

Hatanaka, F., Takumi, T. CHRONO integrates behavioral stress and epigenetic control of metabolism. (2017) Annals of Medicine, 49, 352-356. doi: 10.1080/07853890.2016.1276301.

Sarashina-Kida, H., Negishi, H., Nishio, J., Suda, W., Nakajima, Y., Yasui-Kato, M., Iwaisako, K., Kang, S., Endo, N., Yanai, H., Asagiri, M., Kida, H., Hattori, M., Kumanogoh, A., Taniguchi, T. Gallbladder-derived surfactant protein D regulates gut commensal bacteria for maintaining intestinal homeostasis. (2017) Proc Natl Acad Sci USA, 114, 10178-10183. doi: 10.1073/pnas.1712837114.

Anbutsu, H., Moriyama, M., Nikoh, N., Hosokawa, T., Futahashi, R., Tanahashi, M., Meng, XY., Kuriwada, T., Mori, N., Oshima, K., Hattori, M., Fujie, M., Satoh, N., Maeda, T., Shigenobu, S., Koga, R., Fukatsu, T. Small genome symbiont underlies cuticle hardness in beetles. (2017) Proc Natl Acad Sci USA, 114, E8382-E8391. doi: 10.1073/pnas.1712857114.

Iwasawa, K., Suda, W., Tsunoda, T., Oikawa-Kawamoto, M., Umetsu, S., Inui, A., Fujisawa, T., Morita, H., Sogo, T., Hattori, M. Characterisation of the faecal microbiota in Japanese patients with paediatric-onset primary sclerosing cholangitis. (2017) Gut, 66, 1344-1346. doi:10.1136/gutjnl-2016-312533.

Wang, M., Li, H., Takumi, T., Qiu, Z., Xu, X., Yu, X., Bian, W.J. Distinct defects in spine formation or pruning in two gene duplication mouse models of autism. (2017) Neuroscience Bulletin, 33, 143-152. doi: 10.1007/s12264-017-0111-8.

Nomura, J., Kannan, G., Takumi, T. Rodent models of genetic and chromosomal variations in psychiatric disorders. (2017)Psychiatry and Clinical Neurosciences, 71, 508-517. doi: 10.1111/pcn.12524.

Kishimoto, K., Nomura, J., Ellegood, J., Fukumoto, K., Lerch, J.P., Moreno-De-Luca, D., Bourgeron, T., Tamada, K., Takumi, T. Behavioral and neuroanatomical analyses in a genetic mouse model of 2q13 duplication. (2017) Genes to Cells, 22, 436-451. doi: 10.1111/gtc.12487.

Tokuda, I.T., Okamoto, A., Matsumura, R., Takumi, T., Akashi, M. Potential contribution of tandem circadian enhancers to nonlinear oscillations in clock gene expression. (2017) Molecular Biology of Cell, 28, 2333-2342. doi: 10.1091/mbc.E17-02-0129.

Nakai, N., Nagano, M., Saitow, F., Watanabe, Y., Kawamura, Y., Kawamoto, A., Tamada, K., Mizuma, H., Onoe, H., Watanabe, Y., Monai, H., Hirase, H., Nakatani, J., Inagaki, H., Kawada, T., Miyazaki, T., Watanabe, M., Sato, Y., Okabe, S., Kitamura, K., Kano, M., Hashimoto, K., Suzuki, H., Takumi, T. Serotonin rebalances cortical tuning and behavior linked to autism symptoms in 15q11-13 CNV mice. (2017) Science Advances, 3, e1603001. doi: 10.1126/sciadv.1603001.

Fukumoto, K., Tamada, K., Toya, T., Nishino, T., Yanagawa, Y., Takumi, T. Identification of genes regulating GABAergic interneuron maturation. (2017) Neuroscience Research, doi: 10.1016/j.neures.2017.11.010.

Hirota T, Nakayama T, Sato S, Yanagida N, Matsui T, Sugiura S, Takaoka Y, Hizawa N, Fujieda S, Miyatake A, Sasaki T, Amagai M, Doi S, Ito K, Ebisawa M, Tamari M. Association study of childhood food allergy with genome-wide association studies-discovered loci of atopic dermatitis and eosinophilic esophagitis. (2017) J Allergy Clin Immunol, 140:1713-1716. doi: 10.1016/j.jaci.2017.05.034

Yamazaki Y, Kawarai S, Morita H, Kikusui T, Iriki A. Faecal transplantation for the treatment of Clostridium difficile infection in a marmoset. (2017) BMC Veterinary Research, 13, 150. doi: 10.1186/s12917-017-1070-z

Tia B, Takemi M, Kosugi A, Castagnola E, Ansaldo A, Nakamura T, Ricci D, Ushiba J, Fadiga L, Iriki A. Cortical control of object-specific grasp relies on adjustments of both activity and effective connectivity: a common marmoset study. (2017) J Physiol (Lond), 595, 17203-7221. doi: 10.1113/JP274629

Takemi M, Castagnola E, Ansaldo A, Ricci D, Fadiga L, Taoka M, Iriki A, Ushiba J. Rapid identification of cortical motor areas by high-frequency automatic cortical stimulation and novel motor threshold algorithm.(2017) Front. Neurosci, 11, 580. doi: 10.3389/fnins.2017.00580

Yamazaki Y, Iriki A. Behavioral, cognitive, and neuronal changes in the acquisition of tool use.(2017) In: Watanabe S, Hifman MA, Shimizu T. (Eds.) Evolution of the Brain, Cognition, and Emotion in Vertebrates. Brain Science Series (Series Eds. Okano H. & Iriki A). Springer, Tokyo, pp 169-185. doi: 10.1007/978-4-431-56559-8_8

Nogawa, T., Ogita, N., Futamura, Y., Negishi, S., Watanabe, N., Osada, H. Trachyspic acid 19-butyl ester, a new inhibitor of Plk1 polo box domain-dependent recognition from uncharacterized fungus RKGS-F2684. (2017) Journal of Antibiotics, 70, 705-707. doi: 10.1038/ja.2016.167

Maeda, K., Nakajima, Y., Motoyama, T., Kondoh, Y., Kawamura, T., Kanamaru, K., Ohsato, S., Nishiuchi, T., Yoshida, M., Osada, H., Kobayashi, T., Kimura, M. Identification of a trichothecene production inhibitor by chemical array and library screening using trichodiene synthase as a target protein. (2017) Pesticide Biochemistry and Physiology, 138, 1-7. doi: 10.1016/j.pestbp.2017.03.006

Otaka, J., Hashizume, D., Masumoto, Y., Muranaka, A., Uchiyama, M., Koshino, H., Futamura, Y., Osada, H. Hitoyol A and B, two norsesquiterpenoids from the basidiomycete Coprinopsis cinerea. (2017) Organic Letters, 19, 4030–4033. doi: 10.1021/acs.orglett.7b01784

Nishimura, O., Hara, Y., Kuraku, S. gVolante for standardizing completeness assessment of genome and transcriptome assemblies. (2017) Bioinformatics, 33, 3635-3637. doi: 10.1093/bioinformatics/btx445

Ogawa, T., Kryukov, K., Imanishi, T., Shiroguchi, K. The efficacy and further functional advantages of random-base molecular barcodes for absolute and digital quantification of nucleic acid molecules. (2017) Scientific Reports, 7, 13576. doi:10.1038/s41598-017-13529-3

Yun, C.S., Motoyama, T., Osada, H. Regulatory Mechanism of Mycotoxin Tenuazonic Acid Production in Pyricularia oryzae. (2017) ACS Chemical Biology, 12, 2270-2274. doi: 10.1021/acschembio.7b00353

Germond, A., Kumar, V., Ichimura, T., Moreau, J., Furusawa, C., Fujita, H., Watanabe, T.M. Raman spectroscopy as a tool for ecology and evolution. (2017) Journal of the Royal Society Interface,14, 20170174. doi:10.1098/rsif.2017.0174

Nakagome, S., Chinen, H., Iraha, A., Hokama, A., Takeyama, Y., Sakisaka, S., Matsui, T., Kidd, JR., Kidd, KK., Said, HS., Suda, W., Morita, H., Hattori, M., Hanihara, T., Kimura, R., Ishida, H., Fujita, J., Kinjo, F., Mano, S., Oota, H. Confounding effects of microbiome on the susceptibility of TNFSF15 to Crohn's disease in the Ryukyu Islands. (2017)  Hum. Genet., 136, 387-397. doi: 10.1007/s00439-017-1764-0.

Sato, A., Matsushima, K., Oshima, K., Hattori, M., Koyama, Y. Draft Genome Sequencing of the Highly Halotolerant and Allopolyploid Yeast Zygosaccharomyces rouxii NBRC 1876. (2017) Genome Announce. 5:e01610-16. doi:10.1128/genomeA.01610-16.

Mizuno, S., Nanki, K., Matsuoka, K., Saigusa, K., Ono, K., Arai, M., Sugimoto, S., Kiyohara, H., Nakashima, M., Takeshita, K., Naganuma, M., Suda, W., Hattori, M., Kanai, T. Single fecal microbiota transplantation failed to change intestinal microbiota and had limited effectiveness against ulcerative colitis in Japanese patients. (2017) Intest. Res., 15, 68-74. doi: 10.5217/ir.2017.15.1.68

Aoki, R., Kamikado, K., Suda, W., Takii, H., Mikami, Y., Suganuma, N., Hattori, M., Koga, Y. A proliferative probiotic Bifidobacterium strain in the gut ameliorates progression of metabolic disorders via microbiota modulation and acetate elevation. (2017) Sci. Rep., 7, 43522. doi: 10.1038/srep43522.

Takayasu, L., Suda, W., Takanashi, K., Iioka, E., Kurokawa, R., Shindo, C., Hattori, Y., Yamashita, N., Nishijima, S., Oshima, K., Hattori, M. Circadian oscillations of microbial and functional composition in the human salivary microbiome. (2017) DNA Res., 24, 261-270. doi: 10.1093/dnares/dsx001.

Mizuno, S., Masaoka, T., Naganuma, M., Kishimoto, T., Kitazawa, M., Kurokawa, S., Nakashima, M., Takeshita, K., Suda, W., Mimura, M., Hattori, M., Kanai, T. Bifidobacterium-Rich Fecal Donor May Be a Positive Predictor for Successful Fecal Microbiota Transplantation in Patients with Irritable Bowel Syndrome. (2017) Digestion, 96, 29-38. doi: 10.1159/000471919

Jia, S., Nakano, T., Hattori, M., Nara, K. Root-associated fungal communities in three Pyroleae species and their mycobiont sharing with surrounding trees in subalpine coniferous forests on Mount Fuji, Japan. (2017) Mycorrhiza, 27, 733-745. doi: 10.1007/s00572-017-0788-6.

Doki, N., Suyama, M., Sasajima, S., Ota, J., Igarashi, A., Mimura, I., Morita, H., Fujioka, Y., Sugiyama, D., Nishikawa, H., Shimazu, Y., Suda, W., Takeshita, K., Atarashi, K., Hattori, M., Sato, E., Watakabe-Inamoto, K., Yoshioka, K., Najima, Y., Kobayashi, T., Kakihana, K., Takahashi, N., Sakamaki, H., Honda, K., Ohashi, K. Clinical impact of pre-transplant gut microbial diversity on outcomes of allogeneic hematopoietic stem cell transplantation. (2017) Ann Hematol., 96, 1517-1523. doi: 10.1007/s00277-017-3069-8.

Hayashi, A., Mikami, Y., Miyamoto, K., Kamada, N., Sato, T., Mizuno, S., Naganuma, M., Teratani, T., Aoki, R., Fukuda, S., Suda, W., Hattori, M., Amagai, M., Ohyama, M., Kanai, T. Intestinal Dysbiosis and Biotin Deprivation Induce Alopecia through Overgrowth of Lactobacillus murinus in Mice. (2017) Cell Rep., 20, 1513-1524. doi: 10.1016/j.celrep.2017.07.057.

Shibagaki, N., Suda, W., Clavaud, C., Bastien, P., Takayasu, L., Iioka, E., Kurokawa, R., Yamashita, N., Hattori, Y., Shindo, C., Breton, L., Hattori, M. Aging-related changes in the diversity of women's skin microbiomes associated with oral bacteria. (2017) Sci Rep., 7, 0567. doi: 10.1038/s41598-017-10834-9

Yamazaki, T., Ichihara, K., Suzuki, R., Oshima, K., Miyamura, S., Kuwano, K., Toyoda, A., Suzuki, Y., Sugano, S., Hattori, M., Kawano, S. Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita. (2017) Sci Rep., 7, 11679. doi: 10.1038/s41598-017-11677-0.

Urushiyama, D., Suda, W., Ohnishi, E., Araki, R., Kiyoshima, C., Kurakazu, M., Sanui, A., Yotsumoto, F., Murata, M., Nabeshima, K., Yasunaga, S., Saito, S., Nomiyama, M., Hattori, M., Miyamoto, S., Hata, K. Microbiome profile of the amniotic fluid as a predictive biomarker of perinatal outcome. (2017) Sci Rep., 7, 12171. doi: 10.1038/s41598-017-11699-8.

Nakamoto, N., Amiya, T., Aoki, R., Taniki, N., Koda, Y., Miyamoto, K., Teratani, T., Suzuki, T., Chiba, S., Chu, PS., Hayashi, A., Yamaguchi, A., Shiba, S., Miyake, R., Katayama, T., Suda, W., Mikami, Y., Kamada, N., Ebinuma, H., Saito, H., Hattori, M., Kanai, T. Commensal Lactobacillus Controls Immune Tolerance during Acute Liver Injury in Mice. (2017) Cell Rep., 21, 1215-1226. doi: 10.1016/j.celrep.2017.10.022.

Otsubo, T., Yamada, K., Hagiwara, T., Oshima, K., Iida, K., Nishikata, K., Toyoda, T., Igari, T., Nohara, K., Yamashita, S., Hattori, M., Dohi, T., Kawamura, YI. DNA hypermethyation and silencing of PITX1 correlated with advanced stage and poor postoperative prognosis of esophageal squamous cell carcinoma.(2017) Oncotarget, 8, 84434-84448. doi: 10.18632/oncotarget.21375.

Naganuma, M., Sugimoto, S., Mitsuyama, K., Kobayashi, T., Yoshimura, N., Ohi, H., Tanaka, S., Andoh, A., Ohmiya, N., Saigusa, K., Yamamoto, T., Morohoshi, Y., Ichikawa, H., Matsuoka, K., Hisamatsu, T., Watanabe, K., Mizuno, S., Suda, W., Hattori, M., Fukuda, S., Hirayama, A., Abe, T., Watanabe, M., Hibi, T., Suzuki, Y., Kanai, T. INDIGO Study Group: Efficacy of Indigo naturalis in a Multicenter Randomized Controlled Trial of Patients with Ulcerative Colitis. (2017) Gastroenterology, 154, 935-947. doi:10.1053/j.gastro.2017.11.024.

Lee, C.G., Iida, T., Uwagaki, Y., Otani, Y., Nakaho, K., Ohkuma, M. Comparison of prokaryotic and eukaryotic communities in soil samples with and without tomato bacterial wilt that were collected from different fields.(2017) Microbes and Environments, 32, 376-385. doi: 10.1264/jsme2.ME17131

Izawa, K., Kuwahara, H., Sugaya, K., Lo, N., Ohkuma, M., Hongoh, Y. 2017. Discovery of ectosymbiotic Endomicrobium lineages associated with protists in the gut of stolotermitid termites. (2017) Environmental Microbiology Reports, 9, 411-418. doi: 10.1111/1758-2229.12549

Lee, C.G., Yuki, M., Iida, T., Nakaho, K., Ohkuma, M. Draft genome sequence of Tepidibacter mesophilus strain JCM16806T isolated from soil polluted by crude oil in China. (2017) Genome Announcements,5, e01308-17. doi: 10.1128/genomeA.01308-17

Yuki. M,, Sakamoto, M., Kuwahara, H., Hongoh, Y., Ohkuma, M. Draft genome sequence ofLactococcussp. strain Rs-Y01, isolated from the gut of the lower termite Reticulitermes speratus. (2017) Genome Announcements,5, e00999-17. doi: 10.1128/genomeA.00999-17

Uzuhashi, S., Endoh, R., Manabe, R.I., Ohkuma, M. Draft genome sequences of the oomycete Pilasporangium apinafurcum strains JCM 30513 and JCM 30514, formerly classified as Pythium apinafurcum. (2017) Genome Announcements,5, e00899-17. doi: 10.1128/genomeA.00899-17

Tsuchida, S., Maruyama, F., Ogura, Y., Toyoda, A., Hayashi, T., Ohkuma, M., Ushida, K. Genomic characteristics of Bifidobacterium thermacidophilum pig isolates and wild boar isolates reveal the unique presence of a putative mobile genetic element with tetW for pig farm isolates. (2017) Frontiers in Microbiology, 8, 1540. doi: 10.3389/fmicb.2017.01540

Tashiro, Y., Hasegawa, Y., Shintani, M., Ohkuma, M., Kimbara, K., Futamata, H. Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells. (2017) Frontiers in Microbiology,8, 571. doi:10.3389/fmicb.2017.00571

Tsuchida, S., Murata, K., Ohkuma, M., Ushida, K. Isolation of Streptococcus gallolyticus with very high degradability of condensed tannins from feces of the wild Japanese rock ptarmigan on Mt. Tateyama. (2017) Journal of Geneneral and Applied Microbiology, 63, 195-198. doi: 10.2323/jgam.2016.09.003

Haruta, S., Iino, T., Ohkuma, M., Suzuki, K., Igarashi, Y. Ca2+ in hybridization solutions for fluorescence in situ hybridization facilitates the detection of Enterobacteriaceae. (2017) Microbes and Environments, 32, 142-146. doi: 10.1264/jsme2.ME16186

Lee, C.G., Iida, T., Inoue, Y., Muramoto, Y., Watanabe, H., Nakaho, K., Ohkuma, M. Prokaryotic communities at different depths between soils with and without tomato bacterial wilt but pathogen-present in a single greenhouse. (2017) Microbes and Environments, 32, 118-124. doi: 10.1264/jsme2.ME16136

Katahira, S., Muramoto, N., Moriya, S., Nagura, R., Tada, N., Yasutani, N., Ohkuma, M., Onishi, T., Tokuhiro, K. Screening and evolution of a novel protist xylose isomerase from the termite Reticulitermes speratus for efficient xylose fermentation in Saccharomyces cerevisiae. (2017) Biotechnology for Biofuels,10, 203. doi: 10.1186/s13068-017-0890-1

Kobayashi, H., Nakasato, T., Sakamoto, M., Ohtani, Y., Terada, F., Sakai, K., Ohkuma, M., Tohno, M. Clostridium pabulibutyricum sp. nov., a butyric-acid-producing organism isolated from high-moisture grass silage. (2017) International Journal of Systematic and Evolutionary Microbiology, 67, 4974-4978. doi: 10.1099/ijsem.0.002387

Tohno, M., Tanizawa, Y., Irisawa, T., Masuda, T., Sakamoto, M,. Ohkuma, M., Kobayash, H. Lactobacillussilagincolasp.nov. andLactobacilluspentosiphilussp.nov. isolated from silage.(2017) International Journal of Systematic and Evolutionary Microbiology, 67, 3639-3644.doi: 10.1099/ijsem.0.002196

Sujarit, K., Sujada, N., Kudo, T., Ohkuma, M., Pathom-Aree, W., Lumyong, S. Pseudonocardia thailandensis sp. nov., an actinomycete isolated from a subterranean termite nest. (2017) International Journal of Systematic and Evolutionary Microbiology, 67, 2773-2778. doi: 10.1099/ijsem.0.002017

Khunnamwong, P., Ribeiro, J.R.A., Garcia, K.M., Hagler, A.N., Takashima, M., Ohkuma, M., Endoh, R., Sugita, T., Jindamorakot, S., Limtong, S.Occultifur plantarum f.a., sp. nov., a novel cystobasidiomycetes yeast species(2017) International Journal of Systematic and Evolutionary Microbiology, 67, 2628-2633. doi: 10.1099/ijsem.0.001988

Minegishi, H., Enomoto, S., Echigo, A., Shimane, Y., Kondo, Y., Inoma, A., Kamekura, M., Takai, K., Itoh, T., Ohkuma, M., Ihara, K., Takahashi-Ando, N., Fukushima, Y., Ishii, S., Yoshida, Y., Usami, R. Salinarchaeum chitinilyticum sp. nov., a chitin-degrading haloarchaeon isolated from commercial salt. (2017) International Journal of Systematic and Evolutionary Microbiology, 67, 2274-2278. doi: 10.1099/ijsem.0.001941

Sripreechasak, P., Phongsopitanun, W., Supong, K., Pittayakhajonwut, P., Kudo, T., Ohkuma, M., Tanasupawat, S. Nonomuraea rhodomycinica sp. nov., isolated from peat swamp forest soil. (2017) International Journal of Systematic and Evolutionary Microbiology, 67, 1683-1687. doi: 10.1099/ijsem.0.001843

Sakamoto, M., Iino, T., Ohkuma, M. Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb.nov. (2017) International Journal of Systematic and Evolutionary Microbiology, 67, 1219-1227. doi: 10.1099/ijsem.0.001790

Jutakanoke, R., Endoh, R., Takashima, M., Ohkuma, M., Tanasupawat, S., Akaracharanya, A. Allodekkera sacchari gen. nov., sp. nov., a yeast species in the Saccharomycetales isolated from a sugar factory. (2017) International Journal of Systematic and Evolutionary Microbiology, 67, 250-255. doi: 10.1099/ijsem.0.001607

Tanizawa, Y., Kobayashi, H., Kaminuma, E., Sakamoto, M., Ohkuma, M., Nakamura, Y., Arita, M., Tohno, M. Genomic characterization reconfirms the taxonomic status ofLactobacillus parakefiri. (2017) Bioscience of Microbiota, Food and Health, 36, 129-134. doi:10.12938/bmfh.16-026

Fujita, M., Matsubara, N., Matsuda, I., Maejima, K., Oosawa, A., Yamano, T., Fujimoto, A., Furuta, M., Nakano, K., Oku-Sasaki, A., Tanaka, H., Shiraishi, Y., Mateos, RN., Nakai, K., Miyano, S., Tomita, N., Hirota, S., Ikeuchi, H., and Nakagawa, H. Genomic landscape of colitis-associated cancer indicates the impact of chronic inflammation and its stratification by mutations in RNF43 and Wnt signaling.(2017) Oncotarget 9:969-98. doi:10.18632/oncotarget.22867

Otagiri, M., Khalid, A., Moriya, S., Osada, H., Takahashi, S. Novel squalene-producing thraustochytrids found in mangrove water.(2017) Bioscience, Biotechnology, and Biochemistry, 81, 10, 2034-2037. doi:10.1080/09168451.2017.1359485

Jinnohara, T., Kanaya, T., Hase, K., Sakakibara, S., Kato, T., Tachibana, N., Sasaki, T., Hashimoto, Y., Sato, T., Watarai, H., Kunisawa, J., Shibata, N., Williams, I. R., Kiyono, H., Ohno, H.IL-22BP dictates characteristics of Peyer's patch follicle-associated epithelium for antigen uptake. (2017) J Exp Med 214, 1607-1618.doi: 10.1084/jem.20160770.

Date, Y., Ebisawa, M., Fukuda, S., Shima, H., Obata, Y., Takahashi, D., Kato, T., Hanazato, M., Nakato, G., Williams, I. R., Hase, K., Ohno, H. NALT M cells are important for immune induction for the common mucosal immune system. (2017)Int Immunol 29, 471-478. doi: 10.1093/intimm/dxx064.

Yanagihara S, Kanaya T, Fukuda S, Nakato G, Hanazato M, Wu XR, Yamamoto N, Ohno H. Uromodulin-SlpA binding dictates Lactobacillus acidophilus uptake by intestinal epithelial M cells. (2017) Int. Immunol. 29: 357-363. doi: 10.1093/intimm/dxx043.

Nakajima, A., Kaga, N., Nakanishi, Y., Ohno, H., Miyamoto, J., Kimura, I., Hori, S., Sasaki, T., Hiramatsu, K., Okumura, K., Miyake, S., Habu, S., Watanabe, S. Maternal High Fiber Diet during Pregnancy and Lactation Influences Regulatory T Cell Differentiation in Offspring in Mice. (2017) J. Immunol. 199: 3516-3524. doi: 10.4049/jimmunol.1700248.

Sato, K., Takahashi, N., Kato, T., Matsuda, Y., Yokoji, M., Yamada, M., Nakajima, T., Kondo, N., Endo, N., Yamamoto, R., Noiri, Y., Ohno H, Yamazaki K. Aggravation of collagen-induced arthritis by orally administered Porphyromonas gingivalis through modulation of the gut microbiota and gut immune system. (2017) Sci Rep. 7:6955. doi:10.1038/s41598-017-07196-7.

Lye, H. S., Kato, T., Low, W. Y., Taylor, T. D., Prakash, T., Lew, L. C., Ohno, H., Liong, M. T. Lactobacillus fermentum FTDC 8312 combats hypercholesterolemia via alteration of gut microbiota. (2017) J. Biotechnol. 262: 75-83. doi: 10.1016/j.jbiotec.2017.09.007.

Takayasu, L., Suda, W., Watanabe, E., Fukuda, S., Takanashi, K., Ohno, H., Takayasu, M., Takayasu, H., Hattori, M. A 3-dimensional mathematical model of microbial proliferation that generates the characteristic cumulative relative abundance distributions in gut microbiomes. (2017) PLoS ONE 12(8):e0180863. doi: 10.1371/journal.pone.0180863.

Khalid, A., Takagi, H., Panthee, S., Muroi, M., Chappell, J., Osada H., Takahashi S.Development of a terpenoid-production platform in Streptomyces reveromyceticus SN-593. (2017) ACS Synth. Biol. 6 (12): 2339-2349. doi: 10.1021/acssynbio.7b00249.

Amagai, K., Ikeda, H., Hashimoto, J., Kozone, I., Izumikawa, M., Kudo, F., Eguchi, T., Nakamura, T., Osada, H., Takahashi, S., Shin-ya, K., Identification of gene cluster for telomestatin biosynthesis and efficient production in heterologous host using specific promoter. (2017) Sci. Rep. 7: 3382. doi:10.1038/s41598-017-03308-5

Zhang, L., Hashimoto, T., Qin, B., Hashimoto, J., Kozone, I., Kawahara, T., Okada, M., Awakawa, T., Ito, T., Asakawa, Y., Ueki, M., Takahashi, S., Osada, H., Wakimoto, T., Ikeda, H., Shin-ya, K., Abe, I. Characterization of giant modular PKSs provides insight into genetic mechanism for structural diversification of aminopolyol polyketides. (2017) Angew. Chem. Int. Ed., 56 (7): 1740-1745. doi: 10.1002/anie.201611371

Uchimiya, M., Tsuboi, Y., Ito, K., Date, Y. and Kikuchi, J. Bacterial substrate transformation tracked by stable-isotope-guided NMR metabolomics: Application in a natural aquatic microbial community. (2017) Metabolites 7, e52. doi: 10.3390/metabo7040052

Kikuchi, J. and Yamada, S. NMR window of molecular complexity showing homeostasis in superorganisms. (2017) Analyst 142, 4161-4172. doi: 10.1039/C7AN01019B

Mekuchi, M., Sakata, K., Yamaguchi, T., Koiso, M. and Kikuchi, J. Trans-omics approaches represented used to characterize fish nutritional biorhythms in Leopard coral groupers (Plectropomus leopardus). (2017) Sci. Rep. 7, 9372. doi: 10.1038/s41598-017-09531-4

iSYM Official SNS (Facebook / Twitter)

List of Publications 20172020 2019 2018

List of Publications 2017
2020 2019 2018